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    New at CFDE Training

    Explore our latest tutorial additions and discover lessons across a broad spectrum of technical topics.

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    GWAS in the Cloud

    Analyse genetic variants to obtain correlations to phenotypes and visualize using a Manhattan plot.

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    RNAseq on Cavatica

    Learn to perform differential gene expression analysis using Kids First cancer cohorts on Cavatica.

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    Amazon Web Services

    Learn to connect, setup and conduct analysis using Amazon's cloud computing services.

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    Google Cloud Platform

    Learn to setup, download NCBI's SRA datasets and conduct analysis using Google's cloud computing services.

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    Snakemake Workflows

    Learn to create reproducible and scalable data analyses using the snakemake workflow management system.

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    CFDE Data Portal

    Discover multiple datasets across all Common Fund programs and generate data manifests all in one single search.

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    CFDE Internal Resources

    Find lessons on navigating GitHub, contributing to our websites and identifying MIME type.

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Welcome to CFDE Training Resources!

We are working to make Common Fund data more accessible to researchers and clinicians like you!

Choose from our growing list of tutorials and resources to learn how to perform bioinformatic analyses and access data.

Workshops

Check out our events calendar for upcoming workshops !

Introduction to Amazon Web Services / Elastic Cloud Computing
Feb 25, 2021  •  Virtual Workshop

A hands-on workshop to introduce cloud computing concepts, create a virtual machine, and run a small job via Amazon Web Services (AWS).
Workshop Resources:  AWS  •  BLAST

Introduction to Amazon Web Services / Elastic Cloud Computing
Jan 29, 2021  •  Virtual Workshop

A hands-on workshop to introduce cloud computing concepts, create a virtual machine, and run a small job via Amazon Web Services (AWS).
Workshop Resources:  AWS  •  BLAST

Introduction to the Kids First Data Resource Portal
Dec 17, 2020  •  Virtual Workshop

Walk-through of the Kids First Portal to search, filter and visualize data followed by discussion session for next steps to use Kids First data in one's own research.
Workshop Resources:  Setup  •  Explore  •  Queries

Introduction to Amazon Web Services / Elastic Cloud Computing
Dec 1, 2020  •  Virtual Workshop

A hands-on workshop to introduce cloud computing concepts, create a virtual machine, and run a small job via Amazon Web Services (AWS).
Workshop Resources:  AWS  •  BLAST

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About CFDE

The Common Fund Data Ecosystem (CFDE) Coordination Center (CC) is a NIH Common Fund effort to identify and solve issues that inhibit data access and reuse across Common Fund programs.

By connecting the data and making them more accessible, the CFDE aims to enable novel scientific research that was not possible before, including hypothesis generation, discovery, and validation.